NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068857_102220776

Scaffold Ga0068857_102220776


Overview

Basic Information
Taxon OID3300005577 Open in IMG/M
Scaffold IDGa0068857_102220776 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)539
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005951Metagenome / Metatranscriptome385Y
F047699Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0068857_1022207761F005951N/ATVSPGNALANGWTKNSFKFGDQLLVSFVPAKKDRFFGTCTQFVFVADGKRLGGNGRCGMGTEAVDMNTLPVKPGYTKVEVKMPPDDRKRPESEQEQ*
Ga0068857_1022207762F047699AGGAGMTHRRMALFTLVAVLALMQILIAQTPSTPKAQPFDPHDISGIWKNPGGFDPIIGTNRPPMTDGGKEKWSKTRASARNTP

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