NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068854_100138398

Scaffold Ga0068854_100138398


Overview

Basic Information
Taxon OID3300005578 Open in IMG/M
Scaffold IDGa0068854_100138398 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1866
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001123Metagenome / Metatranscriptome770Y
F011969Metagenome / Metatranscriptome285Y

Sequences

Protein IDFamilyRBSSequence
Ga0068854_1001383982F001123AGGAGGLAKQNEIINNEEIADLHNGSAEGGEIKKVFVEPAISVPVDVLEATTFFQSATSGVTN*
Ga0068854_1001383983F011969N/ALVTLEFSELTLEPALQLMSPTVYIDYEIDTGSGALPKPLGIYLFDTNQGEPPLTSVVNGATQSMLIEGNTEDGVEPESEEDKKKLEEQPLRIQFKDNLLSVKAKKQPVALVLLKIGEELGIPVDIQDQSVSTVIDAEISKLPVEDVVRQLSPQIRLFVRADLTHAERRALRIVLAEPPKATQ*
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