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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005580 Open in IMG/M |
| Scaffold ID | Ga0049083_10000182 Open in IMG/M |
| Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 19866 |
| Total Scaffold Genes | 32 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 24 (75.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Great Lakes, Michigan, USA | |||||||
| Coordinates | Lat. (o) | 44.504638 | Long. (o) | -83.045851 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000369 | Metagenome / Metatranscriptome | 1222 | Y |
| F000376 | Metagenome / Metatranscriptome | 1216 | Y |
| F008245 | Metagenome / Metatranscriptome | 336 | N |
| F013888 | Metagenome / Metatranscriptome | 267 | Y |
| F038675 | Metagenome / Metatranscriptome | 165 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0049083_1000018213 | F000376 | AGGA | MSTYQEKAKECKCCGKHVPLPTVLKEYEKLVVCPTTFSNIIEYKRIWTALGHRPEGSVRKHFSEYVQQIVEKTIVLENNNE* |
| Ga0049083_1000018216 | F000369 | AGAAG | MVEIELAQHFDRMNKVVEELLKGNSATQIATITGFSRKEVVEFIDEWKSVVHNDSSLRDRAKEAISGADQHYAMLIKEAWKTVEDADQSGQLNVKAGALKLIADIEGKRIGMLQDVGVLENNELASQVAEAERKQEVLVKILKEVTSTCPKCKMEVAKRLSQITGIVESIIIDAEEVV* |
| Ga0049083_1000018218 | F013888 | GGAG | MSTIGILPASGKASRVGGIPKFCLPISDERSLLQWHVEQMLEVCDEVRVSTRAEWVPIIQNMDMNIKLIVREPSTMSDAVKFMVGDYNDTVLIGMPDTYIHGSKKNIYREMTNTPGDLVLGTWDCSEDLRGRVGQVLLSGDKVLSSMDKTYSCEYPHMWGTMLFRKNLIRYIDVDLEHPGKQIQEWIDMNLDVRAARTGGKYMDIGTLKGLKQLYKEME* |
| Ga0049083_1000018220 | F038675 | AGG | MKLYQSKEWLYRRYVVQKKTVTEIGKECQVSAMTIQRYLEQFGLIKKR* |
| Ga0049083_1000018225 | F008245 | GGAG | MSDKNTLELISDITEFNDLHKFMKDEHLDKALAIVVKLLMNPDVPSAKSPMLIMELQAMSTKFAVLASYYSTIAKDKAGTENNNKKNVYYSLKESIDKLVDALKYVVRYNS* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |