NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0049081_10000357

Scaffold Ga0049081_10000357


Overview

Basic Information
Taxon OID3300005581 Open in IMG/M
Scaffold IDGa0049081_10000357 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17631
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (21.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030090Metagenome186Y
F042224Metagenome158Y
F092091Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0049081_1000035713F030090N/AMEDPRTKQLKAQYNQVVTNAARNIYLKMQEVVRDVNEAPIRQEDKDAIRLHMIGMITQKPTNPNS*
Ga0049081_1000035728F092091N/AMELIEKLKDFKGAQIISIDAVTEVKLVGGQQNPMQGKIKKVTTGSQVMIFKNGKGYKNMVNRRLKKQNAGDLTTIALFEAIADSGFEPGPRQWGERVDGTPFVEHKGKLYLECIFVKPGKSTYLLGDQEIDKEAIIGLPDKTEGDQGGLINKVIIRTFAIDSII*
Ga0049081_1000035742F042224N/AMRKTLIVYRLHDSTYGPCGNSKTLWVSLREDNTISYSYFGGWQTSGMGFAIENMQLRKSLPIGIRNFKKVEDLHQEIVSVLATGCGSNEISSFEILNDL*
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