NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0049081_10003986

Scaffold Ga0049081_10003986


Overview

Basic Information
Taxon OID3300005581 Open in IMG/M
Scaffold IDGa0049081_10003986 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5564
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001092Metagenome / Metatranscriptome780Y
F003266Metagenome / Metatranscriptome496Y
F006103Metagenome / Metatranscriptome381Y
F051708Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0049081_1000398611F051708N/AMLTHKDPEVQAMLGLLESQRDHAMGLVAAMAKENAELKARMLDAPEPEQQHDDAV*
Ga0049081_1000398612F006103GAGGMARTSFSGPVRAGYQGGTAAPQQPLTPTTINAGTVIPVNEGTATSGFYARVMPTVGFGSSSYLTPGEAFSVFGRVQCGAPFSVAPSTTFNHMAGTVGEFAVIGTYSNNGLMAGVMGIINTNTLSGDAAVMAFMDGDSGVTTARCAFGVAMAQTTGGSGFEYGLDLKMQDPVLDGGGPSGVIPYTKANIRMEDDVVVMVNTGAPVDGTTGDNFAGPGSMYIDSTAGNLYLQTAVITSPVWKLVTRAS*
Ga0049081_100039863F001092GGAMATAKPKSSVVKSLTKAGFYGASKPKRLGIINKVTTKPQRIEMVDKLFLAKKVKGGKK*
Ga0049081_100039867F003266GGAMTQTHDTVKNIIDLASVVAAIGSFLELLTPIFGFIGAVWTLMRIAEMVTGKPFSEIIGRKKPDASNK*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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