NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0049081_10013370

Scaffold Ga0049081_10013370


Overview

Basic Information
Taxon OID3300005581 Open in IMG/M
Scaffold IDGa0049081_10013370 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3100
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001092Metagenome / Metatranscriptome780Y
F005025Metagenome / Metatranscriptome414Y
F042750Metagenome / Metatranscriptome157Y
F066524Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0049081_100133701F066524GAGGMAMTYAQLVVAVSDYCENTFDTTDMNTMIKQAEQRIYNTVQIAN
Ga0049081_100133703F005025AGGAGMDKKQVKSIADTEAKKMVKGHESRMHAKGMKAGGPTSLDRKMYGKNLSRAMNQKSGSK*
Ga0049081_100133707F042750AGGAGGVIKGHMGDCAVMEEGPCTCGTDEILEELALEDADLTAEDFE*
Ga0049081_100133709F001092GGAMAIAKPKGGVIKSLKKAGFYAAAKPKRLSIINKVTTKPQRIEMVDKLFLAKKKGSTK*
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