NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0049080_10017458

Scaffold Ga0049080_10017458


Overview

Basic Information
Taxon OID3300005582 Open in IMG/M
Scaffold IDGa0049080_10017458 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2500
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001019Metagenome / Metatranscriptome804Y
F002387Metagenome / Metatranscriptome565Y
F013184Metagenome / Metatranscriptome273Y
F022414Metagenome / Metatranscriptome214Y

Sequences

Protein IDFamilyRBSSequence
Ga0049080_100174581F002387GAGGMASFLEDVNQMVIDAVYQDIAEQLLEDWINNNLDEGQYYADKQFAEMSGDEFIYNEFNKFYNIKEGDEDYLE*
Ga0049080_1001745810F022414AGGCGGMSKTQETKLAEQLANLADDHWFNPAIFGRYLAEQPLYTVDRIMEMVSYIISEQAKTYELLRIRGTSSEGLLLANELNECIKAYQEVNVISNLKLPKPTVYNIKREEPVKSKQFGWIDIDKNP
Ga0049080_100174582F013184GGAGLNNYNFVIKLAGSVLANNEKEAHAKINAHLDDLGEVDSSRYDLGWPDVSWDMEYDLC*
Ga0049080_100174586F001019AGGAMLSYEPSLEILEVEYSCSPGGVDLFEVYDKTDIPLSVPIYETESLTDAVLYCYNLGKDFTVKTLAEWNERELAYEASR*
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