NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0049082_10004136

Scaffold Ga0049082_10004136


Overview

Basic Information
Taxon OID3300005584 Open in IMG/M
Scaffold IDGa0049082_10004136 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4749
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001840Metagenome / Metatranscriptome627Y
F021965Metagenome / Metatranscriptome216N
F022862Metagenome / Metatranscriptome212N

Sequences

Protein IDFamilyRBSSequence
Ga0049082_1000413612F022862N/AMKFTPQQYELICKTRDEIRHLNAKQHALYDNLTKELNITIYAEDWLFDYIYNEYGSIDDIEARM*
Ga0049082_1000413614F021965N/AFDYLIDPDKYAPFPKSCSWDIKDKNYFNRERTLEAKQCWDEYIETCEQLDARKKQGLQFFVDHMDMLWI*
Ga0049082_100041366F001840N/AMKEEKDSAFLICDCFSHGLLVEKFEGEEEVCLSLFERGMDGRILRWSERLRWCWQILKYGKPWSDFIILNTENQKRLKEFLENK*
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