NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0049082_10006768

Scaffold Ga0049082_10006768


Overview

Basic Information
Taxon OID3300005584 Open in IMG/M
Scaffold IDGa0049082_10006768 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3833
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002398Metagenome / Metatranscriptome563Y
F006182Metagenome379Y
F009266Metagenome / Metatranscriptome320Y
F010618Metagenome301N
F060914Metagenome132N

Sequences

Protein IDFamilyRBSSequence
Ga0049082_1000676810F060914N/AVQQRDTQLKRLIKVRSDISASIYPIQLYQVDDYFTAEENGIELFRFKSQHLCSIKAKELIRRRKNEKNARIIQDINELKVQGIL*
Ga0049082_1000676811F002398AGGAMIPLMLFTLINLNPINNFVSLKTYISENAKIHCQVYWIYEDIPNFPRLNSIEKNKFDFFAYLDTIGIEHTQVGSYYFFRLRSQK*
Ga0049082_1000676812F009266GAGMTAKEIKILDNEIQYLCEQQDRVKAIREYTNINPKFTFLREAETIESLYKSVLENRKQDKSTYFCCATSGWHVVYLRDKKTYKKGEKFSIKIYHTFVLADNLD*
Ga0049082_100067682F006182AGGAMKINFKVTGTIEIPDDAIKHYDVAGKLYALEFNDIMYMLQVCIVAEQGAGGCDVLTDYNEMEYHSITNVRYDDAEFIED*
Ga0049082_100067686F010618AGGAGLTLKELILKLQELDKKYEQYSKDTEVVLAIHSKNEFNPEVNLDYIDEVLHPALDTFSGYICRIVLCGEFEQED*
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