Scaffold Ga0066691

Basic Information
Taxon OID	3300005586 Open in IMG/M
Scaffold ID	Ga0066691_10012187 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005586 Open in IMG/M

Scaffold ID

Ga0066691_10012187 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4046
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

4046

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F020655	Metagenome	222	Y
F039066	Metagenome	164	Y
F041122	Metagenome	160	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0066691_100121874	F020655	GGA	MRAAVLVLVGALLVLVLGLSAPGVRAAGPTLTIISPADHAVIGNGTPVAVIFVVSDFNLTPPGTGGPSPTEGHVDVYVDGLLTMATSQETIELALASGTYAILLRLVADNGTSLNPDVTSSISVTVTQGPAVGTPRIEISYVEIIYPTPGLVLGRDVTISFRVTDFALVPPGRGEPVPNEGHVAVFLDDVYVMAVTAFRPIPFSDLVDGKHTVTVQLVDDAGRPLTPDASDSVTFQIQFAAIVDINPYLQIAQIILAVAIVFVLFYRGWGRNLLATLSGRVRRKNA*
Ga0066691_100121875	F041122	GGAGG	VRPPKPDAMSDPLARRCSIPLALFAFAILLVVSISSSPAAAVAPSLTIVSPTDGAVIANGTPVLVQFQVSNFAFVQPGRVGQIGSPNEGHANVFLDAQLVRLLTDVEPFSLSLISGPHTIQIQLVADNGTTLNPDVSASVRVVTTLGPGGGVPRITILSPTRLESTGHGIYVSYRIENFTLVEPRGQPNGPGEGHVQLLVEGVVVMEVIQYEPVLLVSLPEGDITISARLVNNDNTTLTPDARADVPIHVVASSSVSLPLVSNGGVALLLAFILVVLILRRRKVVARPPNNRGGSP*
Ga0066691_100121876	F039066	GGAG	VNARIVALLLATVGALVVSGIASPSVRAAPAPTLSIVLPSLNTVIGNGSPVVVVFEVTNFNLTDPGNGTSSPDSGHVDIFVDGGWTAKASVNTIVLALPSGPHTIRLQLVMDNGSALNPDVTASVAVMVTQGPAGGTPGLSIFYPREGALLGTDSTISFRVTNFVVVAPGGPTGVPNEGHVRVLLDGAYYADLTDVAPLHLNLKDGLHNVTLQLVDNAGSPLNPNVAVSLHITVQALVGRVTPFDATPFLALANLLIGLGILAAIYRKLEAR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0066691_10012187

Overview

Ecosystem & Geography

Associated Families

Sequences