NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066654_10212106

Scaffold Ga0066654_10212106


Overview

Basic Information
Taxon OID3300005587 Open in IMG/M
Scaffold IDGa0066654_10212106 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1010
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005485Metagenome399Y
F103766Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0066654_102121061F103766N/AAKFKDVPEPARTKQIEDLTKETYYVYIFLSLYARMDGLRSRGILSPNDDMIVTWKRSWLPNLMRSELGHWMLDNNLMEYYSETMVRDLRDAAASPAASATPQPSPQMGAH*
Ga0066654_102121062F005485GAGMNCPACYSEIDDRSYRCKECHRVSSYRRFCWRYRYLVLVIVALIGYWTIPGLVRQWFARDYGKLPFGALVSDQMTLGWLGLTDKGWFCEEPHYKGSLLHLRHNVFQAKDVIVFVHGFTGDYVSTWGKPKVLLDDPRFNRNYDFVFYGFRTTFHRDLPAWEAEAEKLDRLLSHLEDNYKSITIVTHSNGGLLAM
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