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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005591 Open in IMG/M |
| Scaffold ID | Ga0070761_10000035 Open in IMG/M |
| Source Dataset Name | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 98696 |
| Total Scaffold Genes | 90 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 47 (52.22%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions. |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: New Hampshire, Hubbard Brook experimental Forest | |||||||
| Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002944 | Metagenome / Metatranscriptome | 518 | Y |
| F005307 | Metagenome / Metatranscriptome | 405 | Y |
| F011616 | Metagenome / Metatranscriptome | 289 | Y |
| F018212 | Metagenome / Metatranscriptome | 236 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0070761_1000003527 | F005307 | N/A | MTAGTMNRKLAVRAALKAGVLGVFIGIIPLLGIVLTGALAVYFYRRESRFVLPAALGSRLGGAAGVVISAINALFTIAIIALHAQQECVDALLKIAEKYGVNAAAPRFQDNIRDIFTPSGLVSFFIVAVVLAAVGGALASLLLRPRHPRM* |
| Ga0070761_100000353 | F018212 | N/A | MRRASRWDAGFLVLVMLAPAFGPLTMACAARPEAMHCMRQPASGHRAQPAMPCHRAMAQSKPTQSESSPIESEASLQAGDDGNCCQNHCCCGATTSEWAQPASHLLSSLTLPIELARPAQSTVLHSSDIFGHDSARAPPRG* |
| Ga0070761_1000003531 | F011616 | AGG | VNSPVPTKPASDKHRHRHSIYAAEATGLLLIAVLLLILTIIRYWRYIPWSAR* |
| Ga0070761_1000003551 | F002944 | AGGAG | LDRTSTGSKTMKNFLDALVAVLAGNAIYYLLMPHLPVVARHKLFKEDWGLLVDFAVCTVIFAAVKYARRDEA* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |