NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066839_10120001

Scaffold Ga0066839_10120001


Overview

Basic Information
Taxon OID3300005594 Open in IMG/M
Scaffold IDGa0066839_10120001 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV82
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)912
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001594Metagenome / Metatranscriptome666Y
F008755Metagenome / Metatranscriptome328Y

Sequences

Protein IDFamilyRBSSequence
Ga0066839_101200011F008755N/ASGWKAKDARFFRLGFQKVAKENKFNVMNIGVTPTPSRSKTNKGSMNINVKSKQKNPAPMAESIKPPTEEEKKLGALPTTPQLEAGQAQAVQYSAQSVGQICETFFNIAFTRMNVEPITQNERIALGEAYAPLCNKYLTGHSDLIMPLIITLPIILSRLAQMAKLKKEKEIKERYGMDEVPKNQPKKKSAWENMSHGKNETDKG*
Ga0066839_101200012F001594GGAGMEKTKLTKDEYLDSLDPDNLNLEKKDLINFCHGCVDEWKKNKMGNFKFIVAMELIIAGVKITPEDVLKAVWKKILVWFWDLQFQNALASDDSQLDLFRKIREQKHGSG*
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