Scaffold Ga0066832_10020438

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0066832_10020438

Scaffold Ga0066832_10020438

Overview

Basic Information
Taxon OID	3300005597 Open in IMG/M
Scaffold ID	Ga0066832_10020438 Open in IMG/M
Source Dataset Name	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF51B
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2162
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (90.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location Name	Pacific Ocean: Eastern Tropical North Pacific
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014465	Metagenome	263	Y
F024648	Metagenome	205	Y
F029400	Metagenome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066832_100204383	F014465	AGG	MKPRGMVMIGALVRDCSKIMKIVTGYKCSQRGEYIQFAGDHQTAWYPLDSFEILSLEE*
Ga0066832_100204384	F029400	GGA	MKIGDLVTFCPEAWGTPLEDRPLGVVMNVEDYRDGIEPATFLMVTAIFPGDDIPYSSNIKDFEVVNENW*
Ga0066832_100204387	F024648	AGGA	MCEYHLYPGDMFRTKAGLGLIVKKSGGYFTYSNVGDDQKKAYPTIETKRFYGYCDDRSHGQILEVILLPNRKYRRKRK*

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