NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066706_10075405

Scaffold Ga0066706_10075405


Overview

Basic Information
Taxon OID3300005598 Open in IMG/M
Scaffold IDGa0066706_10075405 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2375
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006853Metagenome / Metatranscriptome363Y
F060118Metagenome / Metatranscriptome133Y
F064873Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0066706_100754051F064873AGGAGMPPAKRRVVATQTPEVLHAQEAPVPQRRVGRPPGEASTIVNVRLPLSLVARLDRYLARLEQQTGLKANRGMMARRALELFLLSHEEAASPSKRARRQPCPDAPFVPVRKRRTSTRPQVQ*
Ga0066706_100754052F006853AGGAGMNLVIELDTEGRIWVSGFDGTDPEEAWLQGADDTPDVLRASGLCPLEEKYTVGRWTSTTLDQREIAGQLWVEFSH*
Ga0066706_100754055F060118N/AHFSEDALPTLDTFLKRAKEARVFRRAQAVRDVVQGQRLQTVSETLHFTY*
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