NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070762_10000480

Scaffold Ga0070762_10000480


Overview

Basic Information
Taxon OID3300005602 Open in IMG/M
Scaffold IDGa0070762_10000480 Open in IMG/M
Source Dataset NameReference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16885
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (84.62%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location NameUSA: New Hampshire, Hubbard Brook experimental Forest
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000042Metagenome / Metatranscriptome3762Y
F001247Metagenome / Metatranscriptome737Y
F004586Metagenome / Metatranscriptome432Y
F075195Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0070762_1000048019F001247GGAMKTKTWTVIVNTGKQADLESGLEQKRVQKPPHISAKEFVHWLAPSHIDEDCLRSLFKL*
Ga0070762_1000048023F000042AGGAMKTIKFVVRVNRGGRAAEYVQRVASAPIQMTTDPKLALLMGRLAAEGAIESLGNSRCTPELLSVLVA*
Ga0070762_100004805F004586AGGAGMTTTAETKCAHIPCQCVAQSGDKYCGQACREAGSSEVEIACQCDHGACPLTV*
Ga0070762_100004806F075195GAGMQICSTSCAKIKDLGFRASAQINLYGGRFAIVSDPLDEDDCVAVRATSGDDPLIRTLRLPTAILVSRGDRFLKGPTVVATRTL*
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