NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066835_10003707

Scaffold Ga0066835_10003707


Overview

Basic Information
Taxon OID3300005606 Open in IMG/M
Scaffold IDGa0066835_10003707 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV84
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3531
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (87.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001504Metagenome / Metatranscriptome681Y
F012583Metagenome / Metatranscriptome279Y
F013094Metagenome / Metatranscriptome274Y
F013897Metagenome / Metatranscriptome267Y
F023620Metagenome / Metatranscriptome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0066835_1000370713F013897GGAGGMNFSKDQLLALMNTIDFATDNDASYEEYTILQSGTSDLEPIRDILYNEYIHQT*
Ga0066835_1000370715F001504AGGAGMSYDTEHYYALHTFLEDDELHGIWNIVERAMNRHGFDVSNSELSMRLYDQELDENIEHDMENLL*
Ga0066835_100037073F023620GGAGGMKTALFLSEYDLSTVYYLCSYYMDNADLDFQDKAYIKELQNRVDKLMEVTK*
Ga0066835_100037075F012583AGGAGGMSLSEQVKVQAFDKYIMRGGDQSLQNIEDLCDFGFNMCQLGYDTETFNDVVIGVIEKLTERLNHE*
Ga0066835_100037079F013094GGAGGMISAFFTGVAVAIPTSLIMMKLLNSSLFINNSELADLNQKISVVINQIDEYREERREERENFLNVSNDTK*
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