NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066835_10018219

Scaffold Ga0066835_10018219


Overview

Basic Information
Taxon OID3300005606 Open in IMG/M
Scaffold IDGa0066835_10018219 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV84
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1887
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043417Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0066835_100182191F043417GAGGMQKQKYTKEEIEAGVKFLQNKNVDFSYDKDDMQINFSIDVGCRIWTDGSSIWSRGVVKGVKVNSLSLTATHSKEMYAEEDWDKLKEEDLYWSGGLTGYAFYDGSGKDGTWYDGVDDASALINRNTSKESDGLIYTDDGFVKNLVKYLQDECDFDNSFVKLSNYLDFEYSEQGMQDMETVNFDVEMDGDFWIKCNDELVKFLHNKEVA*
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Institute for Fundamental Biomedical Research
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