NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070740_10082819

Scaffold Ga0070740_10082819


Overview

Basic Information
Taxon OID3300005607 Open in IMG/M
Scaffold IDGa0070740_10082819 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1496
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000703Metagenome / Metatranscriptome928Y
F009517Metagenome / Metatranscriptome316Y
F099605Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0070740_100828192F000703N/AMQIREYKSEDLAALRAIHAAQGFDYALPDPGNPLFVTKLVLADDARQTLGAALLRLTAEAYLLLDPRAGTPRQRWQSLLALHEAARRDASVRGLEDVHAWLPPQIARTFGRRLERLGWIRDDAWTPYCKKLCA*
Ga0070740_100828193F099605AGGAGGMPSTTNSAFWDFNPSDPVTLTASFIFDTEDTQESAPVATALAAIQARIAAASITATQPDGATVAISVRI*
Ga0070740_100828194F009517AGGAGMGRGAQAQTRQLTDQQLANINALNQQFLGQQQQAANLLIPQFQSILNNPGLSPADKAALTGQSQGAIASAFDSLAEAARNRAARANNSAGFSELTDDLARQKGIAEGNQAAQNQLAFSN
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