NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070763_10488430

Scaffold Ga0070763_10488430


Overview

Basic Information
Taxon OID3300005610 Open in IMG/M
Scaffold IDGa0070763_10488430 Open in IMG/M
Source Dataset NameWarmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)703
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location NameUSA: New Hampshire, Hubbard Brook experimental Forest
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014282Metagenome / Metatranscriptome264Y
F028867Metagenome / Metatranscriptome190Y

Sequences

Protein IDFamilyRBSSequence
Ga0070763_104884301F014282GGAGGMKTKMVPLRNLIALFGVLFVLNSCGGSDPGCPVCGTTKNGPIGLIDVMLVPEHNPNGEPGGPFNIFDISWVDPTTRTYTVTDRIGLDVPVFSTVTNIALWSVGGDNSVSEGGNNASPCWVDAATGETIPPLTSAQGNYTRFGCKTNGFRLPGF
Ga0070763_104884302F028867N/AVPACPITPVISPPFYEHTDQFTFGVNWYLNYWVLVKSEVNLDQLKTPSVQGILPRNYYVFLETLQFRF*
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Institute for Fundamental Biomedical Research
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