NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074647_1001978

Scaffold Ga0074647_1001978


Overview

Basic Information
Taxon OID3300005611 Open in IMG/M
Scaffold IDGa0074647_1001978 Open in IMG/M
Source Dataset NameSaline surface water microbial communities from Etoliko Lagoon, Greece
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)7266
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location
Location NameEtoliko Lagoon, Greece
CoordinatesLat. (o)38.4825Long. (o)21.315Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008856Metagenome / Metatranscriptome327Y
F044214Metagenome / Metatranscriptome155N

Sequences

Protein IDFamilyRBSSequence
Ga0074647_10019783F044214AGAAGMQGKENNTDLQDEIRLLKIQLGNLEVQIADYQQIVKELSDKLRLYEEINGSVFRVSRK*
Ga0074647_10019785F008856N/AMKLSQQQVRRMYSHPDPDLDLEDEFWPLMGIFVAILLGWTGLIHLIDWLTFNAIPLWMEPFTITPLIFLVVMKERYDSINPLHWWPMLWGYRCPLPEHDHITIRPLDEEDIIKKYGGRCNVFLVDHEHIKFRRKKDAVMFGLTQSIFK*
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