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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005611 Open in IMG/M |
| Scaffold ID | Ga0074647_1002572 Open in IMG/M |
| Source Dataset Name | Saline surface water microbial communities from Etoliko Lagoon, Greece |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5777 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Etoliko Lagoon, Greece | |||||||
| Coordinates | Lat. (o) | 38.4825 | Long. (o) | 21.315 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F014612 | Metagenome | 261 | N |
| F019640 | Metagenome | 228 | N |
| F027166 | Metagenome | 195 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0074647_10025721 | F014612 | N/A | MKTLFGFKEVTQIVIFIIIAIFAKYAKAQVPDTIYYQPFTYITDAETTGTTDSQFAFMVYESKILPNTGVKTIEPIDKVMDSTQVAEYAFNIIYRNENLNWLDAARLMQREKLAKLYAPVNEIIRDMQGYGFFVKTRQKFGGGFEGKWIARING |
| Ga0074647_10025724 | F019640 | AGAAG | MSYTEQSLVYLSRDYRVTASFGAVGASASAGGAVITDNDDDKLTDAELNTGAIYQEVFTASGLATFTVTENNGQLPEVTTDINVYRNGLLLNDSYIASHSAVDGTLTLTFTPDNGDRISIVWYGRGEITNNGIYQQIFTPTGSSAEFTCTENSGIIPSRKQEMFVYVNGIFLDIDKISEYNPQESKFTLNFTPSSTDTIAATWFDSFPNNIKVIQETFSADGTQTTFTVTKNGGNLAKVKDAILLMRNGQHINNDYITGINPTAGTITLTFTPDQGDDITLIWFVEEFVTPSNSAAVSMFQEEFTADGVSPSFTVTENEGKLPESLSAIMVYRNGQFISNQFISTHDSVTGTITFGFVPRSGEKITIIWVVSNL* |
| Ga0074647_10025725 | F027166 | N/A | YYQNTFTRQYNKNVITNGSWNTTTGYYYFIVPKVEFENQAEQIQNIQLIIPNIPADGDLSVKVELYNVYGEYGLDPLPNILQGGSVPVLQDYYTVTYEAANTFLQYIHTGFFSDQNDIIRFQSDNDNVAYKTYEVTTIIGDGPNLNSPGHLEVKNDSDEWVITENGWKVGNTGDAKNISQLLCNEVIKGQLLPVKKFMQTTFIMNDPDTAFLQPHYAISYDSGYWVFHGGTYDLYKDAVKGVWWKIKEDN* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |