NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0074647_1007706

Scaffold Ga0074647_1007706


Overview

Basic Information
Taxon OID3300005611 Open in IMG/M
Scaffold IDGa0074647_1007706 Open in IMG/M
Source Dataset NameSaline surface water microbial communities from Etoliko Lagoon, Greece
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2250
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location
Location NameEtoliko Lagoon, Greece
CoordinatesLat. (o)38.4825Long. (o)21.315Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001656Metagenome / Metatranscriptome656Y
F072869Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0074647_10077062F001656AGGAGGMPIIQNRSTDLTRRQAFNGKGLTFIEVIWNNEDIAPQTTPEALDSVFDQTTKVVNKNGTLLAASYRLDAKATDDDATEATSISADESITSYQYICEGTPGQFNNADSAGDINMDVDTTVIADAEADLLADIRAVISGDSADGQLGVKIRTLLPEGVGSTGDDAIYGMFDQRGDA*
Ga0074647_10077063F072869N/AMEQSIAIILGPESKLRDKTPILYAMPEQEPEGWTDLKRMRYLDHDISGGRNIKAWLRNEYGGLVLQQPPFDKHKDQSEIFTTIREPKERWWSGIRDFMHMLPYYSWWENEKIMEQWPHFHRATLRIHDIMEQIKPQHLIKVDDTLGDRMVRFAKRHRLLCYGAFPHLRHIRHSRNDIQVMEKKGRKQLEQWLAKNPDRQKQLDEYLEPDYEYWNKVKHQD*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.