NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0074649_1000122

Scaffold Ga0074649_1000122


Overview

Basic Information
Taxon OID3300005613 Open in IMG/M
Scaffold IDGa0074649_1000122 Open in IMG/M
Source Dataset NameSaline sediment microbial communities from Etoliko Lagoon, Greece - sediment
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)96536
Total Scaffold Genes109 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)88 (80.73%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location
Location NameGreece: Etoliko Lagoon
CoordinatesLat. (o)38.4825Long. (o)21.315Alt. (m)Depth (m)25
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000325Metagenome / Metatranscriptome1296Y
F010910Metagenome / Metatranscriptome297Y
F058817Metagenome / Metatranscriptome134N
F078367Metagenome / Metatranscriptome116Y
F083943Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0074649_1000122100F078367AGGAGMINIFIWCIYGIFVGSIAKSIVPGEEKMGFFQTVALGVSGSYAGGAISYLLGMENVLSAGGIIMGVGGSVLALLVYNKIVK*
Ga0074649_100012215F058817GGAMTTTTKENAMDDINTTLLIAALEAEGIVEPIDDIGSHPLDWMDVVGVDLFDECWTPEEAY
Ga0074649_100012216F010910GGAGMLTLCTIFGMVVGFEGFENGKVYVGVYTPNMEYGYVITKDEIYLDTIFEKY*
Ga0074649_100012246F083943AGGAGMADLPILNAVEPTVIPAKTYDRVWVEEIVIRAPDPNGDVTGEVKLHKYGMFDGVAELEPGNGQWIRVENMLAKSAEDTDLQTAMTALLAYVGKVGVENNIIQQ*
Ga0074649_10001228F000325GGAGMKTANGNDKLGKENCIVVSRPVGDTCPSSCDFLGNGCYAEQTEKIYPGVRPAGMQNVITERGRIRSMIIDAKRKGKAIRFMERGDWFLNGELDVDFVDNVAWACESIVSNGGKLPKMWFYTHVYDDRIPAKLGKYFSIFASVHNENHMNEAKSKGFTKFAWCDSDQKIAPKRPRSKVKADAWRKSLPKLVVLGGEKFVTCPEIRRGRGVVTCTPTKNSIGCNMCLDKEKPNVLFPCH*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.