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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005613 Open in IMG/M |
| Scaffold ID | Ga0074649_1000122 Open in IMG/M |
| Source Dataset Name | Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 96536 |
| Total Scaffold Genes | 109 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 88 (80.73%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Greece: Etoliko Lagoon | |||||||
| Coordinates | Lat. (o) | 38.4825 | Long. (o) | 21.315 | Alt. (m) | Depth (m) | 25 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000325 | Metagenome / Metatranscriptome | 1296 | Y |
| F010910 | Metagenome / Metatranscriptome | 297 | Y |
| F058817 | Metagenome / Metatranscriptome | 134 | N |
| F078367 | Metagenome / Metatranscriptome | 116 | Y |
| F083943 | Metagenome | 112 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0074649_1000122100 | F078367 | AGGAG | MINIFIWCIYGIFVGSIAKSIVPGEEKMGFFQTVALGVSGSYAGGAISYLLGMENVLSAGGIIMGVGGSVLALLVYNKIVK* |
| Ga0074649_100012215 | F058817 | GGA | MTTTTKENAMDDINTTLLIAALEAEGIVEPIDDIGSHPLDWMDVVGVDLFDECWTPEEAY |
| Ga0074649_100012216 | F010910 | GGAG | MLTLCTIFGMVVGFEGFENGKVYVGVYTPNMEYGYVITKDEIYLDTIFEKY* |
| Ga0074649_100012246 | F083943 | AGGAG | MADLPILNAVEPTVIPAKTYDRVWVEEIVIRAPDPNGDVTGEVKLHKYGMFDGVAELEPGNGQWIRVENMLAKSAEDTDLQTAMTALLAYVGKVGVENNIIQQ* |
| Ga0074649_10001228 | F000325 | GGAG | MKTANGNDKLGKENCIVVSRPVGDTCPSSCDFLGNGCYAEQTEKIYPGVRPAGMQNVITERGRIRSMIIDAKRKGKAIRFMERGDWFLNGELDVDFVDNVAWACESIVSNGGKLPKMWFYTHVYDDRIPAKLGKYFSIFASVHNENHMNEAKSKGFTKFAWCDSDQKIAPKRPRSKVKADAWRKSLPKLVVLGGEKFVTCPEIRRGRGVVTCTPTKNSIGCNMCLDKEKPNVLFPCH* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |