NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074649_1001662

Scaffold Ga0074649_1001662


Overview

Basic Information
Taxon OID3300005613 Open in IMG/M
Scaffold IDGa0074649_1001662 Open in IMG/M
Source Dataset NameSaline sediment microbial communities from Etoliko Lagoon, Greece - sediment
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)26097
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (56.41%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location
Location NameGreece: Etoliko Lagoon
CoordinatesLat. (o)38.4825Long. (o)21.315Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002594Metagenome / Metatranscriptome545Y
F019311Metagenome230Y
F027183Metagenome / Metatranscriptome195N
F088809Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0074649_100166215F088809N/AMTFSLYILMCSFTLNICDGPYLVKQNFNDFRECTLYGYRESEKVLKEFNIEEMNKNQYYTKFMCKENESI*
Ga0074649_10016623F002594N/AMAKIPTSRLNTAPKDYEKIDFDQLIEDLQDMIKLLNTTYPKDIVDEEDRKQWFLMRGN*
Ga0074649_10016627F019311AGGAGMNHTFKHPSKYKKEVKETKYVPIRECKVGKKYRFEEHEHTVAEYEYNYSYMTGTCVTNEPGPNIVFGKKEHLIEIKLDFPRPELEEYDNKLMFYFPHDDVLYDKVKVVDYE*
Ga0074649_10016629F027183AGGAGMVNCRECWDDGYIWTHPSGSEDDKPRFEKCDACGILKSDSEAKAKAGNRKYFLVWWNGFQVNMINGGSKPVSSEILHEDFNEDHGWHEEDIEEVSCLKIGEKYDTGGPIENVTIYRYA*
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