NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074649_1011710

Scaffold Ga0074649_1011710


Overview

Basic Information
Taxon OID3300005613 Open in IMG/M
Scaffold IDGa0074649_1011710 Open in IMG/M
Source Dataset NameSaline sediment microbial communities from Etoliko Lagoon, Greece - sediment
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)6002
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (29.41%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium ADurb.Bin157(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location
Location NameGreece: Etoliko Lagoon
CoordinatesLat. (o)38.4825Long. (o)21.315Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002528Metagenome / Metatranscriptome551Y
F009001Metagenome324Y
F048963Metagenome / Metatranscriptome147N
F057323Metagenome136N
F068778Metagenome124N

Sequences

Protein IDFamilyRBSSequence
Ga0074649_101171010F009001AGGAGMSVTIYLTDHNGRKVAFFYRIDNERYLTCPQLIWACRQHPEYQGTAESKEDFIEQAKGVMKQLNRSLPVRETKTCTECGLSLQGMENEGTTCNDHNFNR*
Ga0074649_101171011F057323N/AMKILVLTIRAHGEEDDIYVFDNREVNVLPTIKEWLKDNDIKITLPDHVTDTDSFMDWFYASENSLEDCYDFFVSLQYKELLSE*
Ga0074649_101171012F068778N/AMNYLILNIGNKNIVDWGVFAEVEDSTDSELTQQIELVLPDHIQQEIYKLITDNIDQAKAVEAMAQF*
Ga0074649_101171016F002528N/AMKKTPKTTITTLPSSEDLPIIKIVSEEEEMHVNLGLEMEKETHDMLVKWGKEVASDEDYVRIAIDAGIREAVDALHSSC*
Ga0074649_10117102F048963GAGMSENYAEFEPTDFVFDWSSIDHDEVKKGFDFFYANNQITGFKMDENGNYVRDQDGNLIAYRTSKQRHQPKSWFNNYYQ*
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