NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074649_1012887

Scaffold Ga0074649_1012887


Overview

Basic Information
Taxon OID3300005613 Open in IMG/M
Scaffold IDGa0074649_1012887 Open in IMG/M
Source Dataset NameSaline sediment microbial communities from Etoliko Lagoon, Greece - sediment
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)5537
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location
Location NameGreece: Etoliko Lagoon
CoordinatesLat. (o)38.4825Long. (o)21.315Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022895Metagenome / Metatranscriptome212N
F036720Metagenome / Metatranscriptome169N
F060729Metagenome132Y
F068898Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0074649_10128873F022895N/AMAANLSLAAVAGSNCPRTAGVKELYTIPVADISSITLGSDHDITDIVFASVGVGFGKINFKRGECEVTEAMERSNQVEVNFAVANPTSTQRKELQAIKDSCEQYMVARLYDGDRLLFIGYDEEFGDEAFAAFMSAESTSGRAKADDNLFSFTMMAEQGEFLRVLSGISGATVPATTVPAIVAELVAATSV*
Ga0074649_10128875F068898N/AMIASKAEIKALAFSNTFDMNAVKDNLIQLVEWEQVLSLFGADFYDDVVANPGSYTTLIDTYLKPYIAYNVKAYLSKANHIKTGNKGAQTAQGSNEQIANVEFAKREAMNMATKYKRQMITYLDNTKPVLWKGEPKDDQIINKIIIM*
Ga0074649_10128876F036720N/AMDSSYVQNYFTNGIESSFILAAFFFLLLAFVTSKWFQFTIRDIESERTPLEVSFSFWWLDNYNSVISFFLMCFPIIVFTEDLVHWLGLNFLPDAMKTENPMYIYYIFGLSFGWILEVILKKAKLIRNAQK*
Ga0074649_10128879F060729N/AVKLHELKEKLNDLELKQYDGMHLRGGTILDTEKFVQNHISFLEANAGNITYLCYYDRLLEFYQKTQNDEL*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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