NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074649_1017613

Scaffold Ga0074649_1017613


Overview

Basic Information
Taxon OID3300005613 Open in IMG/M
Scaffold IDGa0074649_1017613 Open in IMG/M
Source Dataset NameSaline sediment microbial communities from Etoliko Lagoon, Greece - sediment
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4301
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location
Location NameGreece: Etoliko Lagoon
CoordinatesLat. (o)38.4825Long. (o)21.315Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061677Metagenome131N
F061811Metagenome131N
F064578Metagenome128N
F079882Metagenome115N
F091643Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0074649_10176132F061811N/AMDIKKLTDKELSTLIKECRQELEQRKQSLEDVLLDDDFQKYKSKYARLTLFYDFCRGVYSVTESQLKEKNQSKKKRNIRNAVINYLLTQGFSHQDVVDEFDLARTSLSSPISYHEKYYKLDKSYTDIYNDVMTFFED*
Ga0074649_10176134F079882AGGAGMATIKQISLIEPQMAIFLIKKLLPLIHDEAISEAINKLSDEDFEELVNILMWLGYEEKTINEILK*
Ga0074649_10176137F061677N/AMSNERQFSKTIVLCSLLDLALEELAMSKEFKRRTKLYKGVLERELKRQQLAVELECGKEVADDGLAAQNQLTLQIDYLLDVVFGIRENKELVKEIERHLLSD*
Ga0074649_10176138F091643N/AMKAGSKVKVYLGNVAACYGVATGRAKKMNGVTIYELQECEPFDTWDADYFRDATDVSFDIKFAKEIKTFNNGKRVYLNTGTFNYHKMKKECFKYEQKTLF*
Ga0074649_10176139F064578N/AMSTESKKQAFIQGIQDGTFQGDAATIYNLIQDNHVMTLPEISVILDKSLNQFSGRISELLDAGLIKEMKGDKYSLFRITQSDQERYECAKMRYNEKIEKLRKKADELGYFLVKKMW*
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Institute for Fundamental Biomedical Research
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