Basic Information | |
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Taxon OID | 3300005613 Open in IMG/M |
Scaffold ID | Ga0074649_1017613 Open in IMG/M |
Source Dataset Name | Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4301 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (30.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece |
Source Dataset Sampling Location | ||||||||
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Location Name | Greece: Etoliko Lagoon | |||||||
Coordinates | Lat. (o) | 38.4825 | Long. (o) | 21.315 | Alt. (m) | Depth (m) | 25 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F061677 | Metagenome | 131 | N |
F061811 | Metagenome | 131 | N |
F064578 | Metagenome | 128 | N |
F079882 | Metagenome | 115 | N |
F091643 | Metagenome | 107 | N |
Protein ID | Family | RBS | Sequence |
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Ga0074649_10176132 | F061811 | N/A | MDIKKLTDKELSTLIKECRQELEQRKQSLEDVLLDDDFQKYKSKYARLTLFYDFCRGVYSVTESQLKEKNQSKKKRNIRNAVINYLLTQGFSHQDVVDEFDLARTSLSSPISYHEKYYKLDKSYTDIYNDVMTFFED* |
Ga0074649_10176134 | F079882 | AGGAG | MATIKQISLIEPQMAIFLIKKLLPLIHDEAISEAINKLSDEDFEELVNILMWLGYEEKTINEILK* |
Ga0074649_10176137 | F061677 | N/A | MSNERQFSKTIVLCSLLDLALEELAMSKEFKRRTKLYKGVLERELKRQQLAVELECGKEVADDGLAAQNQLTLQIDYLLDVVFGIRENKELVKEIERHLLSD* |
Ga0074649_10176138 | F091643 | N/A | MKAGSKVKVYLGNVAACYGVATGRAKKMNGVTIYELQECEPFDTWDADYFRDATDVSFDIKFAKEIKTFNNGKRVYLNTGTFNYHKMKKECFKYEQKTLF* |
Ga0074649_10176139 | F064578 | N/A | MSTESKKQAFIQGIQDGTFQGDAATIYNLIQDNHVMTLPEISVILDKSLNQFSGRISELLDAGLIKEMKGDKYSLFRITQSDQERYECAKMRYNEKIEKLRKKADELGYFLVKKMW* |
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