NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074649_1021233

Scaffold Ga0074649_1021233


Overview

Basic Information
Taxon OID3300005613 Open in IMG/M
Scaffold IDGa0074649_1021233 Open in IMG/M
Source Dataset NameSaline sediment microbial communities from Etoliko Lagoon, Greece - sediment
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3668
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (41.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location
Location NameGreece: Etoliko Lagoon
CoordinatesLat. (o)38.4825Long. (o)21.315Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015079Metagenome257Y
F024541Metagenome / Metatranscriptome205N
F048232Metagenome148N
F063642Metagenome129N
F091789Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0074649_102123310F015079N/AMVQAQIESIQGKGDWKGKHGTMYTFEIAFNDGTVGEANSKTQEPPYKVGDEVYYEIKREDQYGKKLKVSKNAPPPGGFQQFQPAKSNPNKDKQIIRGMCFKVAGMAWACNYKHKQFELPHEVMVKDVLDLAKKYEKAFNEWMEE*
Ga0074649_102123311F048232GAGMDGRITYEERVARIMFLREHRRNLLRDYCDESVTKRQKDLLGREVSRVQKALKNLDPDGMFPP*
Ga0074649_10212335F024541N/AMEFFDMIKSQYGSLTQCARKLGTNQEQLLRQIRTGDRRVLDAIADNCRLSRQEVRWEFRYYRETMET*
Ga0074649_10212336F091789AGTAGMIEVFPFRRCKTWQEAKKEWGWLMRDKGLQQINRPPAIGYGEAPDLITSKVEGPGFVIYPNGYDPREINHTLSSRASIYGEGYCGTLNPF*
Ga0074649_10212338F063642N/AMQYTSTQLFDEVIQLATPQCVTNRDMTLVRKLKDLQNYTQRLEKIADVSILKEKS*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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