Basic Information | |
---|---|
Taxon OID | 3300005613 Open in IMG/M |
Scaffold ID | Ga0074649_1021233 Open in IMG/M |
Source Dataset Name | Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 3668 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (41.67%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
---|---|
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Greece: Etoliko Lagoon | |||||||
Coordinates | Lat. (o) | 38.4825 | Long. (o) | 21.315 | Alt. (m) | Depth (m) | 25 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F015079 | Metagenome | 257 | Y |
F024541 | Metagenome / Metatranscriptome | 205 | N |
F048232 | Metagenome | 148 | N |
F063642 | Metagenome | 129 | N |
F091789 | Metagenome / Metatranscriptome | 107 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0074649_102123310 | F015079 | N/A | MVQAQIESIQGKGDWKGKHGTMYTFEIAFNDGTVGEANSKTQEPPYKVGDEVYYEIKREDQYGKKLKVSKNAPPPGGFQQFQPAKSNPNKDKQIIRGMCFKVAGMAWACNYKHKQFELPHEVMVKDVLDLAKKYEKAFNEWMEE* |
Ga0074649_102123311 | F048232 | GAG | MDGRITYEERVARIMFLREHRRNLLRDYCDESVTKRQKDLLGREVSRVQKALKNLDPDGMFPP* |
Ga0074649_10212335 | F024541 | N/A | MEFFDMIKSQYGSLTQCARKLGTNQEQLLRQIRTGDRRVLDAIADNCRLSRQEVRWEFRYYRETMET* |
Ga0074649_10212336 | F091789 | AGTAG | MIEVFPFRRCKTWQEAKKEWGWLMRDKGLQQINRPPAIGYGEAPDLITSKVEGPGFVIYPNGYDPREINHTLSSRASIYGEGYCGTLNPF* |
Ga0074649_10212338 | F063642 | N/A | MQYTSTQLFDEVIQLATPQCVTNRDMTLVRKLKDLQNYTQRLEKIADVSILKEKS* |
⦗Top⦘ |