NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074649_1023761

Scaffold Ga0074649_1023761


Overview

Basic Information
Taxon OID3300005613 Open in IMG/M
Scaffold IDGa0074649_1023761 Open in IMG/M
Source Dataset NameSaline sediment microbial communities from Etoliko Lagoon, Greece - sediment
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3345
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Nanoarchaeota → unclassified Nanoarchaeota → Nanoarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location
Location NameGreece: Etoliko Lagoon
CoordinatesLat. (o)38.4825Long. (o)21.315Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006971Metagenome / Metatranscriptome361Y
F039398Metagenome / Metatranscriptome164N
F054882Metagenome / Metatranscriptome139N
F058532Metagenome135N

Sequences

Protein IDFamilyRBSSequence
Ga0074649_10237611F054882N/ANDIYNRELDMYDAETNIKAARWLSYYDGWHHWNSSKHCWGRYDS*
Ga0074649_10237612F058532N/AMMDGIIGIVLNIVGVDMTLNQNGRRQIVKDEYDLFDNKARTSWEFICNYMNWEIVKNKEDYFEDYVCKIRGIYYPMELQVAAYWHNHSLEKLSNFYISKSKIDLLRGYVDNYINVEAGCVFMNCVPNKFATINIKHIKDSYLMQNAQGEYFYKIPITENINYFTSGLIDAKCDCLENHLEIMQRSKGRMRHLEKEYNIRGFNGICCR*
Ga0074649_10237613F039398GAGGMEYAADDINIGYMTCLMFINSEKTLVDKLNNITELQPIDHQGGVSFDLVLKSLPTYVEITMNHNGNFDIYTKTLKGETEFKDEVVETLINFLHIFYINMVDDENKLLMNAIDTTTYRKIAKRMHYRENFGNDSAI*
Ga0074649_10237615F006971GGALIYQGIEYKKHQKVKFVIPTDLRIVDPKTKKILWRYGIIQFFAKNTKSAWILENGTKESIKISLFCVLPVN*
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