NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068856_100144885

Scaffold Ga0068856_100144885


Overview

Basic Information
Taxon OID3300005614 Open in IMG/M
Scaffold IDGa0068856_100144885 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2383
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012363Metagenome / Metatranscriptome281Y
F049585Metagenome / Metatranscriptome146Y
F103464Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0068856_1001448853F103464GGAVVPLVSGAKVALCPYCLRTVEIMRQVRDGEAAMLKSHPARRY*
Ga0068856_1001448854F012363N/AVLLQVVVHCPHFDRAVTATRNEAIDRLVACSDSDRCRDPAPSGAPPDHDRPYPRGCPVFPSLSK*
Ga0068856_1001448855F049585GGAVGGGDFLLRGRFADWESGLAFGPDLDRVSVRLAIDATSGVASGRDLFHFYSREVEPFGQGAYRALGTFTGAEGARPGEMLIESPLGHTALIAVTFDARKGDFGPGWHDLIQNSVPFGDRPDQGPVRSARAWLLTPQLAAA*
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