NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068856_101847752

Scaffold Ga0068856_101847752


Overview

Basic Information
Taxon OID3300005614 Open in IMG/M
Scaffold IDGa0068856_101847752 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)615
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035457Metagenome / Metatranscriptome172Y
F099664Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0068856_1018477521F035457GGCGGMSEEPDLVRLLYRADWTRLSLAAEVSVRRDLDLDRAYTEAAVAPPGHEWEMATDQLGAETRRSTLLIQPGRRYREQGEDRVGGCDGDRSWLAIREGDGWNVEADDGPEPPLPPMLRPSWLLTGYTLEGGEPVTVGEREALRLVATPRPVIR
Ga0068856_1018477522F099664N/ALNQLWPRGPRRKRRAWRPPWDEQPDDPRGTWDEQPDDPNEAWDEQPPPRRYPRG*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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