NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068852_100635244

Scaffold Ga0068852_100635244


Overview

Basic Information
Taxon OID3300005616 Open in IMG/M
Scaffold IDGa0068852_100635244 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1074
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008041Metagenome / Metatranscriptome340Y

Sequences

Protein IDFamilyRBSSequence
Ga0068852_1006352441F008041N/AICPYSAPIQRVLFAIRRLLRAGYHVVAYETTAAVFTEADPMILPEVISQVREDIRSRIAMLTSEGVTEFGFFGSSLGSFILYNCVGHGIPELRWGVFNTGGNIARGLWNMTTLRQVHEARGWSLPRLEEAWAELQWPDFGRLDGCRFVFSSSRRDTVAPLHNIADYLGPMLQAGAKVSVYEVPAISHRTTVIVGLWKGPQLIRMVRPPTNAAS*
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