Scaffold Ga0068859_100697791

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0068859_100697791

Scaffold Ga0068859_100697791

Overview

Basic Information
Taxon OID	3300005617 Open in IMG/M
Scaffold ID	Ga0068859_100697791 Open in IMG/M
Source Dataset Name	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1106
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan, Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022439	Metagenome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068859_1006977912	F022439	AGGAGG	MKTLKIVVLVALMSLVAQAQDRSDADATYALKGPVRTFKVEGATFVLKDGEYVEGPRVAQMEASFNEDGNRTDLLMYNDKGVLSRRIVMKFDGRKMTEAFNYDGGGRMWLRIVNVYDDNGRLKKELTYNGDGSLRSMKTLKRDELGQAVEVKEYNAQEVLVDHFINTFDGKLLLTTERKVYRPDGSLASTSFYEAAKRRTETTTYQPDGSVANKTVRTAQQLEQYGPDGSLQKTGTISVEHR

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