NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068859_101003862

Scaffold Ga0068859_101003862


Overview

Basic Information
Taxon OID3300005617 Open in IMG/M
Scaffold IDGa0068859_101003862 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)916
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011361Metagenome / Metatranscriptome291Y
F023774Metagenome / Metatranscriptome208Y
F074342Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0068859_1010038621F023774N/AVPNAPKQKETQQKMSLGSNGVDLERLLRKILTRHCCTNFCINVSLARFAPSFVQ*
Ga0068859_1010038622F074342AGGMVWIGIVRCKKFKQDIVARTFALIVPVWHVLQQVLCNRETVPNAPKRKETKQNMSFGSNGVDREHSLRKVLARHRGMNFCINCTSLELLHQVSCSSETVQKAPERKEMHQNMSLGSNSVDRERSLPKILTRHRGLNFCINCTSLVCFVASFVQ*
Ga0068859_1010038623F011361N/ASCFGAFLSFRVHFGPFRYCTKLGAKRAKQVQLMQNFVQRCLVIIFRNERSRSASLDPKLMFWFVSFHLGAFGTVSLLHKTCYKTHQTGAINAKV*
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