NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068859_101856286

Scaffold Ga0068859_101856286


Overview

Basic Information
Taxon OID3300005617 Open in IMG/M
Scaffold IDGa0068859_101856286 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)665
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058612Metagenome / Metatranscriptome134Y
F069643Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0068859_1018562861F058612GGAMRKNKTQLRKHKVVHFMHPKTRSHNGDLPAKESRETTQELSFGPNEVDWASSLRKNKMELRKHKVVHFMHPKTRSHNLYLTATESRETTQKLSFGPKEVDWACSLRKNKMQLR
Ga0068859_1018562862F069643GGAGGVRSGFGVHTMHHIVLPMLRLVFSHRTCPIHFFRPKTKFLGGFARFRCREVPVVRSGFGVDTMHHFVLPKLRLVFRNEHAQ

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