Scaffold Ga0068864

Basic Information
Taxon OID	3300005618 Open in IMG/M
Scaffold ID	Ga0068864_100000099 Open in IMG/M
Source Dataset Name	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005618 Open in IMG/M

Scaffold ID

Ga0068864_100000099 Open in IMG/M

Source Dataset Name

Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	85269
Total Scaffold Genes	162 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	141 (87.04%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

85269

Total Scaffold Genes

162 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

141 (87.04%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Ecosystem

Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan, Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan, Kellogg Biological Station

Coordinates

Lat. (^o)

42.3948

Long. (^o)

-85.3738

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F034408	Metagenome / Metatranscriptome	175	Y
F056282	Metagenome	137	Y
F074512	Metagenome	119	Y
F091541	Metagenome / Metatranscriptome	107	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0068864_100000099114	F056282	AGG	MTLIDKPVEGVKTDARPHPAGAKGARLSLKEVAERAWKARMSPRLRAWATQVLAKANVSTGNRRQKGKAILDAYRAKVPYIADPVMGEFMETPDQTLCLDEGGLCFIGTDCDGSAIALAAAMMSIGIPAMIVGSSHKNPSDTPTHVFMAFEDDDGSWVRMDGTTKHEVGSAPPRKREWWVEPGAEAKERGEGDFVGMSGTNSFLGNSSPKERHPSISLLDLRYPTIR*
Ga0068864_100000099116	F091541	AGGAG	VSEEQILAADNRNGEVRRNEMAKQQNQSKKSPKAIIGRQIHTFQREKGLPQKAKFGLGQPAPKLDEVGLGSPEAKVGLAAAEKCIRCSFGNVPVIEEVVWTIPLPLTAEEALSTLGDTVNLLSGSSSVPGVASIDSTFLINGILQTDILAQGVGVHVFCEPMSFSTIGNAFSAPDTTVAPPPSPDVFTSNDLDNGAFPASVETDGSNFGPAVFEFGNPVWRAGWNFINAYQFQWRTSQRELVLNELAADVSYFGSFADAEAAGTSEVAIIEYVAAVNATYRSKGSATIFLPVNFRRVGSVNTTPGDATTNTGVFHPTRDFDLAPVTWGGMRFQGYGCRGQMYRPIESPCFLERGIPIGMLFQVQDAVHQAQMLEAVTINNEPLGINVSPDENLSDTTATGAAVMLEQTLDATPANVPQQTNVSRQVFKGGILKLAIKIKGWEMPGGWKAFCADSGLIPKAG*
Ga0068864_100000099117	F034408	AGGAG	MTQPRDDQIRNLALYAPKIAFGMVAGVPRVPFVDEIPVQFSSSTVNAPPVVNNFQNNLSQDTLIERISFNLFQQNSFPGSPFQSTYFNQLKQSGATGIGVQLQVYGGPKYIVSNTFVDLGNLADVLAVTWPAGWPLAKQSNVKVSAILTETPVSVPYNATLTFLGWQFLDKTLDDLSDDDCRDRLRSLGIETPDIKKLLLPK*
Ga0068864_100000099126	F074512	GGAGG	MHEFLIVSALIGATLLVVRSTIFRSVRRLYPALLECCQCSGTWIGAAAGVSGVASTGHGRVIDAIVVGAATSFLSMLADAILLHLLGDPSEGDQS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0068864_100000099

Overview

Ecosystem & Geography

Associated Families

Sequences