Scaffold Ga0073905_10008751

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0073905_10008751

Scaffold Ga0073905_10008751

Overview

Basic Information
Taxon OID	3300005655 Open in IMG/M
Scaffold ID	Ga0073905_10008751 Open in IMG/M
Source Dataset Name	Active sludge microbial communities from Klosterneuburg, Austria, studying microevolution and ecology of nitrifiers - Klosterneuburg WWTP active sludge metagenome KNB14_supernatant
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5063
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Active Sludge And Wastewater Microbial Communities From Klosterneuburg, Austria

Source Dataset Sampling Location
Location Name	Austria: Klosterneuburg
Coordinates	Lat. (^o)	48.3	Long. (^o)	16.2	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001089	Metagenome / Metatranscriptome	781	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073905_100087516	F001089	GGAG	MAPAESGYILHLSSLSLTFVGFSALVVTLRSTLGGDLSDRHLRLVRLYIEGGLLLTALALVPTLLNLLLVPDTVTWALSSAAAASILTCVLLIQFRRRRMIEPGRFPPWVVIVYAVSIVAVAGLWFNVAGIPLPSNAGPYAVVLTWALCVFGFIFVRTIELFLHREA*

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