NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0078894_10007383

Scaffold Ga0078894_10007383


Overview

Basic Information
Taxon OID3300005662 Open in IMG/M
Scaffold IDGa0078894_10007383 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8539
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (70.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002406Metagenome562Y
F006182Metagenome379Y
F010161Metagenome307N
F038678Metagenome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0078894_100073831F002406GGAMSERLRDELSKEYDDETKDLIIRAFRNGLFQSPNIVEELKSSSLIESDYFEDEDED*
Ga0078894_1000738313F038678AGGTGGMKVNFEKIFFYCLLIFVSGSIGYAIKPVENVDQKAIEEKYNNQQRVCSQAIHMMSSFSKNNYHEKSKKEIAIERMLRD*
Ga0078894_1000738317F010161GAGGMTKRNKMLYDALIDYVSYFYNCSDMPESAKLNALKIFEHLLDEKIDVNDFIPVMRQIQLSLDMVAI*
Ga0078894_100073835F006182AGGAMEIPSDAIPHYDVAGKLYAYEINDILYMLQLCIIGEAGAGGIDILTDPEELENHSIKNIRYVDAQFEG*
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