NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0078894_10008015

Scaffold Ga0078894_10008015


Overview

Basic Information
Taxon OID3300005662 Open in IMG/M
Scaffold IDGa0078894_10008015 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8217
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009266Metagenome / Metatranscriptome320Y
F072286Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0078894_100080157F072286N/AMNPELIVENPTAEKTFTYYITERHGYVETTLSYLRKLKISKLISVFSRHMRGKVYIEEDGDLRLFLKRLQHDNINVTLKEDYSHPQSFFDNLPSLDDYTWTGEQFDKYKSDWMIDFKCYFSKYDNIKHVRDSIFETKDGKQIKIYPTVYLDGKPLTPAQAKKIGFEPQSIVTKDLEEYYD
Ga0078894_100080158F009266GAGGMTVKELKILDKEIQYLCNYKDRIKEIRQVTNINPAYSFTKEAEIIEYLYKSILEERKKDKSTFFSIGTSGWYVIYLREKKTYKKGEKFKIKIFHSFAYTDNLG*
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