NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0078894_10026762

Scaffold Ga0078894_10026762


Overview

Basic Information
Taxon OID3300005662 Open in IMG/M
Scaffold IDGa0078894_10026762 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4719
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (72.22%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007691Metagenome / Metatranscriptome346Y
F009531Metagenome / Metatranscriptome316Y
F023106Metagenome / Metatranscriptome211Y
F040623Metagenome / Metatranscriptome161Y
F080058Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0078894_1002676213F080058AGGAGMNEYTVELIHEPSGAHMNFVMFSDLKEDEVQLSKEIWADMSVVVLDYVEGEE*
Ga0078894_1002676215F023106GGAMRISRRVTDEEKVANKMGNIISDLRVDLELVGEYLAKSQPYVVYNRLQVIAESAKETKEGTNYASNGL*
Ga0078894_100267622F009531N/AMTQQVAIYEMNYSVSPGGIDCWEATIQGYGTSTTGSDFKTAGEALNWVLDRYPDEMLELTVVSHPAYEKEFV*
Ga0078894_100267623F007691AGGAMNTIDDLINEIYESNFSHLEFEENMGGDACDCHIHTTLNTIALYAGIKVGE*
Ga0078894_100267626F040623AGGAGMKVKIAIEQIVDIDEAMSNDIGFEMYGPENMSTEDKVDYLIARFVEDIDTLVKYDEVIHQVSVEYIED*
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