NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0078894_10187059

Scaffold Ga0078894_10187059


Overview

Basic Information
Taxon OID3300005662 Open in IMG/M
Scaffold IDGa0078894_10187059 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1872
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F004840Metagenome / Metatranscriptome421Y
F009143Metagenome / Metatranscriptome322Y
F009530Metagenome / Metatranscriptome316Y
F048252Metagenome / Metatranscriptome148Y
F105172Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0078894_101870591F009530AGAAGMTITYSIWQGSRLLSIDNVAYEIKAIDHLMDTLNASELGKKVKFSANIQSIKTGDNK*
Ga0078894_101870592F009143AGGAGMMTKWDTIQADVSDAYVYLDEEEMYNKALEEGLIELGSDEYDEDELSKSLTLDWND*
Ga0078894_101870593F105172GGAMTIELNDYGFVFDTYVCYIALSWQFLAPATIALIAYKIYKRKKNK*
Ga0078894_101870597F000447AGGAMGYIEIFRINEEGAGWVDLSEATPEEMLDLEIGLFQEGAL*
Ga0078894_101870598F004840AGGMYKLTCAYDSNAPHWSAEYENEYGAWENFFLFTDWGMANEYSTVNLYTPTGKCYTKVFYRSGMVAVK*
Ga0078894_101870599F048252GGTGGMMTRKDYIATAEILKYVSNKTHPAVFSKMVNDFAEMFAKDNE
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