NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070764_10016802

Scaffold Ga0070764_10016802


Overview

Basic Information
Taxon OID3300005712 Open in IMG/M
Scaffold IDGa0070764_10016802 Open in IMG/M
Source Dataset NameWarmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3621
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location NameUSA: New Hampshire, Hubbard Brook experimental Forest
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008565Metagenome / Metatranscriptome331Y
F035384Metagenome / Metatranscriptome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0070764_100168023F035384AGGAGMKKYLSVFWPAAVVLILSAGLSAKDLNTKGKAWLDAHSEAAAVNVNGNWHEKDWGAVVLLQAEGSRDVTGDGDGWAITGVVSGKQIFLLFSQKGGVAYTAELTWESDKSLNGSYAKGFMEEKKKNRPMHLIKP*
Ga0070764_100168024F008565GGAMKRLAIAATLLLLCISFPASLEASHKVPRYLSKESSIDMSHMNRVFLGWVDLEPDAWALYSYTSKADWANTIASLNAGFARSVQATYLPGRTITAARDSENEITSANDLYIKFSDIQVDYENAHLILSIHFIDLKTNSEIASIPVRPYYGNASGLKNYLKAALDEVAKKLQVEVTGETTGKK*
Ga0070764_100168025F008565GGAGGMKRLAITATLLLLCISFPLPSHAARHKVPRYLTKESSVDMSKMTSIFVGWVDLGADDWALWGYGSKTDWTDIIGSLNSSFSRNLVPGRTITSAKDKADENAAGNDLYIKFSDVRVDYNNYHLILSIHFIDPKTNSEIAVIPVRPYYGNDWGLKNYLKAALDEVGTKVQVEVTGQSAEKKRK*
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