NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066905_100290784

Scaffold Ga0066905_100290784


Overview

Basic Information
Taxon OID3300005713 Open in IMG/M
Scaffold IDGa0066905_100290784 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1278
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011916Metagenome285Y
F031686Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0066905_1002907844F031686AGGAGGMHGEMINRYQKLNSEDQKTFRRWLWANTVVGAILLAGLIALAVNVPGGKSETTDQHATIHHKLLPPERASISPSR*
Ga0066905_1002907845F011916GGAGGMWTRLSHWALLTGLTFAVPTLAPTIAAAQAGVSDAANLYPGRHSARCTPAPIFGCVCTIDPSGEALMFTDLDSMADHDFKDVADSEYSRMISWLRRTC

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