NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0076923_107547

Scaffold Ga0076923_107547


Overview

Basic Information
Taxon OID3300005735 Open in IMG/M
Scaffold IDGa0076923_107547 Open in IMG/M
Source Dataset NameSeawater microbial communities from Vineyard Sound, MA, USA - control T0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Wisconsin, Madison
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2276
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)41.4417Long. (o)-70.7744Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034541Metagenome / Metatranscriptome174N
F042349Metagenome / Metatranscriptome158N
F085576Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0076923_1075472F085576AGGAGMKQWYIKLKAGNIENGYYEVGHNFDLVLEVVKSEFNKDCEALGFTPVTSEIVYVEQTDI*
Ga0076923_1075475F042349AGGAGGMMEFEIGDKVKVIGSSTVGLVIDIDYGENIVTISDSYAETNNSELQYKADELQLLTVDHDEDMDSLDEMRDMEMRDNGYRWDDWN*
Ga0076923_1075477F034541AGGAGGMKAVESMTWDELQSALTEYQVNGNGGGMGVKDIQVKHSIEDEVAWRLEKGYTDLTPREIEIELLEQGKIERRYL*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.