NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0076926_108245

Scaffold Ga0076926_108245


Overview

Basic Information
Taxon OID3300005738 Open in IMG/M
Scaffold IDGa0076926_108245 Open in IMG/M
Source Dataset NameSeawater microbial communities from Vineyard Sound, MA, USA - sterilised with crude oil T0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Wisconsin, Madison
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1021
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)41.4417Long. (o)-70.7744Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021539Metagenome / Metatranscriptome218Y

Sequences

Protein IDFamilyRBSSequence
Ga0076926_1082454F021539N/AIFLTVILIGLSACSPNPHVDKQPPHETEQEMNESITKDMEAMDREKAKEEMPGPTDFESIVDALGCMFDPSDCPLKKSKEEQKMDR*
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