Basic Information | |
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Taxon OID | 3300005739 Open in IMG/M |
Scaffold ID | Ga0076948_1000364 Open in IMG/M |
Source Dataset Name | Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Singapore Centre on Environmental Life Sciences Engineering (SCELSE) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 98018 |
Total Scaffold Genes | 152 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 132 (86.84%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project |
Source Dataset Sampling Location | ||||||||
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Location Name | Singapore | |||||||
Coordinates | Lat. (o) | 1.411221 | Long. (o) | 103.905587 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F003439 | Metagenome / Metatranscriptome | 486 | Y |
F009065 | Metagenome / Metatranscriptome | 323 | Y |
F019997 | Metagenome / Metatranscriptome | 226 | Y |
F085204 | Metagenome / Metatranscriptome | 111 | N |
F099186 | Metagenome / Metatranscriptome | 103 | N |
Protein ID | Family | RBS | Sequence |
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Ga0076948_100036414 | F009065 | GAGG | MMSFFKKKPWDKPFSEKVAKRVSRIPTGELEQWIDQALTEVGKCVSMYTKTRDVLYLDEAVKGAEAVHAVTHELHQRMTR* |
Ga0076948_100036472 | F085204 | AGGAG | MAVDRTEEYMPTTDAFATTSVEDRPATPSSNAIQSGWAAAESLTTASGDYPTEFKFNDGEFTVVKFIDQSGPFAIYKQHFLQQKTVGKKSYVSLGPNDPLCTKLGSRPEDKRAFTIAVVTPTAVVRQMLIASPRLYKTLHSAEFSPQGPLTKNFWAISRTGKMQQTVYHLQAIKPRDLMEDYGIDQAFAEAEVAKIKPYERSVIKEHTWEELEEIANSLL* |
Ga0076948_10003649 | F019997 | AGGAG | MNKEQLIAAAGSYIRAALASVVALYMAGQTDPSVLVNAFVAGLVGPLAKALNPKDKAYGIGASK* |
Ga0076948_100036491 | F099186 | GGA | MPGRYSDGTYGRRPWTDDGRQPYHTPEEAAFPPQEYLGPFQSNQDRLLNQAMAVWTMSSEEIQEHVRPNLPQINLFPDRYGYTENELTLEDIVRLPAGREQRVESDYSNTPNTTQSTSRNTLGYGV* |
Ga0076948_100036494 | F003439 | GGA | MATNQSRSLNSDMTEGATDGKYRKRRPNTTVQPGMGDQTVQANRAGLHPYMNYGFINSEEPNKVNPGAN* |
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