NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0076948_1019543

Scaffold Ga0076948_1019543


Overview

Basic Information
Taxon OID3300005739 Open in IMG/M
Scaffold IDGa0076948_1019543 Open in IMG/M
Source Dataset NameCyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSingapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4474
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (22.22%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.411221Long. (o)103.905587Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007359Metagenome / Metatranscriptome352Y
F010746Metagenome / Metatranscriptome299Y
F016115Metagenome / Metatranscriptome249Y
F020860Metagenome / Metatranscriptome221N
F022820Metagenome / Metatranscriptome212Y
F035200Metagenome / Metatranscriptome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0076948_101954314F035200N/AMVLRDGVRVSDDMHDREEDAEHEANFWREIIKRWPDGTKVTIKKIGG*
Ga0076948_101954315F010746AGTAGMTYYCSVSGEALPPERVEALQVLGVPEPLWTKKEYSQVKKLRAVYAGDDGSNDIVICDKVDGGNLFDNEVIAETDNDI*
Ga0076948_101954316F016115GGAGLKILEESFTSKGFKLQQVKRDGDVAIYKKQLDDPESDSSHYEVIAIKRHNGYEIAGVKMPPAEMYPSDSQWGDWAFTCTSIEDANKRFDYLQDKLKNYNATSILPSGEKRGRGRPRKIALTENQTQVE*
Ga0076948_101954317F020860N/AMNITKVKKLAEGGYALFSIDPKTKQETQVGYMGENLDPKGWLPEGVKIENS*
Ga0076948_10195434F022820N/AMKHENRISKMLEKRVLQDEDPKLIAQIDKYLKELELVFVKWAKAHPNWKESEE*
Ga0076948_10195439F007359N/AMQLVKQNLGAHWVIGIKGKPSDIEQFHNRIYNWGGTNGELQWMSDSFAYFWITLEKLERVMFKYTMNSLSEKLGQKFRGTKGGLKQVVLNRVKNTINSIPVESFVKTAQIQDFYTIGQVSAEKLDNDS*
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