NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0076948_1130793

Scaffold Ga0076948_1130793


Overview

Basic Information
Taxon OID3300005739 Open in IMG/M
Scaffold IDGa0076948_1130793 Open in IMG/M
Source Dataset NameCyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSingapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1754
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.411221Long. (o)103.905587Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006300Metagenome376Y
F020893Metagenome221Y
F040084Metagenome162N
F090339Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0076948_11307932F090339GAGGMSDTTPNNGNIGNAVHILAPGTTWRLWEPGTQIENLEWLDDPALRPSDAAILAKTAELDAM*
Ga0076948_11307933F006300GGAVKWAPILEDWLKAFVAGSAAVFMTGNYDLENALKTGLAAVLPMIYAWANTKDTRYGRK*
Ga0076948_11307935F020893GAGMPTEIYVALISGIAIICAAVLPAVLIERARKENADDHQYVRRILARVERKIDNHLEDHDNGVTRRNKNQTK*
Ga0076948_11307936F040084GGAGGMALRDEIRTKQNRLADLTIWLDAQPNGEEWYEIIYDQQYSSQAVAGLLTKHGFKADANLIARFRNKHVAK*
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