NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0076924_1024748

Scaffold Ga0076924_1024748


Overview

Basic Information
Taxon OID3300005747 Open in IMG/M
Scaffold IDGa0076924_1024748 Open in IMG/M
Source Dataset NameSeawater microbial communities from Vineyard Sound, MA, USA - control T14
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Wisconsin, Madison
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32510
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (23.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)41.4417Long. (o)-70.7744Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006240Metagenome / Metatranscriptome378Y
F060337Metagenome133N
F101863Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0076924_102474810F006240N/AMAYSDNPNHKKIIDCVLEQNAKLFQNLGIDSSRSDYDKAKVAERQKLRRIIDLDPEKIMRLVKDSLDD*
Ga0076924_102474813F060337N/AMKIEYNEVTLTLPKPPSLNKWYSGKHWSVRTKQKETYSQAIKDELQTIDSFTMDRFAIDVQYNCRYDVDNAITCVKFLADYLRGDGYVTDDNTKYFFSQSTTFNPELNKDEFRATIKCYGYSIRE*
Ga0076924_10247485F101863AGGAVGTTQNQLRVTYRSKQVISGRGGAERLRLPIYHLDIELAYFKAKVWRKIDTSIVSFIDDKDRILKDDFIVNSKLNDDLYGSKFKGQRGLRIDKIHSKKQVGITNW*
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