Basic Information | |
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Taxon OID | 3300005747 Open in IMG/M |
Scaffold ID | Ga0076924_1024748 Open in IMG/M |
Source Dataset Name | Seawater microbial communities from Vineyard Sound, MA, USA - control T14 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Wisconsin, Madison |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 32510 |
Total Scaffold Genes | 30 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (23.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil |
Source Dataset Sampling Location | ||||||||
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Location Name | USA | |||||||
Coordinates | Lat. (o) | 41.4417 | Long. (o) | -70.7744 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F006240 | Metagenome / Metatranscriptome | 378 | Y |
F060337 | Metagenome | 133 | N |
F101863 | Metagenome | 102 | N |
Protein ID | Family | RBS | Sequence |
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Ga0076924_102474810 | F006240 | N/A | MAYSDNPNHKKIIDCVLEQNAKLFQNLGIDSSRSDYDKAKVAERQKLRRIIDLDPEKIMRLVKDSLDD* |
Ga0076924_102474813 | F060337 | N/A | MKIEYNEVTLTLPKPPSLNKWYSGKHWSVRTKQKETYSQAIKDELQTIDSFTMDRFAIDVQYNCRYDVDNAITCVKFLADYLRGDGYVTDDNTKYFFSQSTTFNPELNKDEFRATIKCYGYSIRE* |
Ga0076924_10247485 | F101863 | AGGA | VGTTQNQLRVTYRSKQVISGRGGAERLRLPIYHLDIELAYFKAKVWRKIDTSIVSFIDDKDRILKDDFIVNSKLNDDLYGSKFKGQRGLRIDKIHSKKQVGITNW* |
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